DNA, genetics, cell biology & molecular calculations
Complement, reverse complement, GC% and base composition for a DNA sequence.
Transcribe DNA to RNA and get base composition.
Estimate protein MW from residue count (avg. 110 Da/residue).
Amino acid composition and counts for a protein sequence.
Split a DNA/RNA sequence into codons and check frame completeness.
Monohybrid cross genotype ratios from two parent genotypes.
Classic Punnett square cross for a single gene.
Hardy-Weinberg allele and genotype frequencies from q.
Hardy-Weinberg genotype frequencies from allele frequency p.
Dominant vs recessive phenotype frequency under Hardy-Weinberg.
p²+2pq+q²=1 equilibrium breakdown from allele frequency.
Exponential population growth N(t) = N0*e^(rt).
Population growth with a carrying capacity K.
Unrestricted exponential growth N(t) = N0*e^(rt).
Doubling time from growth rate: ln(2)/r.
Bacterial generation time from population change over time.
Hemocytometer cell count: cells/mL from count and dilution.
Cell concentration from total count and volume.
Percent viability from live and dead cell counts.
PCR product amplification: copies = initial x (1+E)^cycles.
qPCR relative fold-change from Ct values and efficiency.
GC% = (G+C) / total bases x 100 for a DNA sequence.
Wallace rule Tm for short primers/sequences.
Wallace rule primer Tm = 2(A+T) + 4(G+C), for primers < 14nt.
dsDNA molecular weight = bp x 650 g/mol/bp.
RNA molecular weight = nt x 320.5 + 159 g/mol.
Convert DNA ng/uL concentration and MW to nM.
Convert RNA ng/uL concentration and MW to nM.
DNA molecule count from mass and fragment length.
Plasmid molecule count from mass and plasmid length.
TE (cfu/ug) from colonies, DNA mass, and fraction plated.
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